Software

 Mac OS X Related

• Fink
  
• Mac OS X
  
• Pooch
  

 Programming

• IntelliJ IDEA
  
• Java
  
• Python
  
• R
  

 Finite Automata

• Finite State Automata Utilities
  
• The Java Computability Toolkit
  
• JFLAP
  
• GraphViz
  

 Phylogenetics

• MrBayes
  
• PAML
  
• PHYLIP
  
• TreeEdit
  

 Protein Structure

• Modeller
  
• PyMOL
  
• Structure Prediction Meta Server
  
• Swiss-Model
  
• Swiss-PdbViewer